Popular repositories
nma_project
Part 2 of the network meta-analysis support tool. This project retrieves all the RCTs registered on clinicaltrials.gov and extract related intervention information with emphasis on grugs (for now), resolve with RxNorm drug listings and Pubmed
scibert_pico_extraction
Part 3 of the network meat-analysis support tool. This project finetnes the SciBERT pretrained model on the ebmnlp NER task for the prediction of PICO in medical research abstracts from Pubmed.
Rob2
A tool for assessing the risk of bias in randomized control trials
cirex
A tool to explore useful terms for building SR search strategy.
cirean
Part 1 of a Flask app to support network meta-analysis.
auto_label
Platform for automatically labelling interventions from RCT abstracts from Pubmed articles.
autosynthesis
Execise files for the autosynthesis study group.
search_string_build_helper
A tool to support search specialist in exploring and building relevant search terms during systematic reviews
readless
A CS TM tool project
phd_experiments
PhD text mining experiments
complexity
The set of data to support the experiments conducted to establish the need for more detailed reporting on the attributes of teext mining models
reproducibility-data
Data and code to support the citation screening reproducibility experiment and publication on the TREC 2004 dataset
auto-citation-screening
Data to support automatic citation screening experiments