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22# You can be lazy and just let bookdown search for the .Rmd files to merge into your thesis.
# For this to work, make sure to start any acknowledgements and/or abstract Rmd files with
# an underscore, e.g. _abstract.Rmd.
# Otherwise bookdown will start to merge the abstract in to the body text which almost
# certainly isn't what you want
# If you specify a sub directory with rmd_subdir, then bookdown will search through this
# folder too
rmd_subdir: ["front-and-back-matter"]
# Alternatively, you can comment out rmd_subdir and specify manually what files to include with rmd_files
#rmd_files: ["index.Rmd", "01-rmd-basics-markdown.Rmd", "02-rmd-basics-code.Rmd", "03-rmd-basics-cites-and-refs.Rmd", "04-oxthesis.Rmd", "05-conclusion.Rmd", "front-and-back-matter/98-appendices.Rmd", "front-and-back-matter/99-references.Rmd"]
output_dir: "docs"
book_filename: "PGR_submission_McGuinness_Luke_1877809"
# You can provide a link here if you want people to be able to suggest and submit changes
# to the source .Rmd files on your github repo, cf. https://bookdown.org/yihui/bookdown/html.html
edit: https://github.com/mcguinlul/thesis
# If this is set to true, then you don't have to manually delete the merged _main.Rmd file if something goes wrong when you try to build
delete_merged_file: true